| Rank | Club | Pts | Game | W | D | L | GF | GA | GD | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | FC Ryukyu | 12 | 4 | 4 | 0 | 0 | 11 | 5 | 6 | |
| 2 | Kashiwa Reysol | 12 | 5 | 4 | 0 | 1 | 5 | 2 | 3 | |
| 3 | Ventforet Kofu | 11 | 5 | 3 | 2 | 0 | 9 | 3 | 6 | |
| 4 | Mito Hollyhock | 11 | 5 | 3 | 2 | 0 | 7 | 2 | 5 | |
| 5 | Montedio Yamagata | 9 | 4 | 3 | 0 | 1 | 6 | 2 | 4 | |
| 6 | Fagiano Okayama | 9 | 5 | 3 | 0 | 2 | 6 | 5 | 1 | |
| 7 | Albirex Niigata | 7 | 5 | 2 | 1 | 2 | 6 | 4 | 2 | |
| 8 | Kyoto Sanga F.C. | 7 | 4 | 2 | 1 | 1 | 3 | 2 | 1 | |
| 9 | FC Gifu | 7 | 5 | 2 | 1 | 2 | 4 | 4 | 0 | |
| 10 | Ehime FC | 7 | 5 | 2 | 1 | 2 | 3 | 4 | -1 | |
| 11 | V･Varen Nagasaki | 7 | 5 | 2 | 1 | 2 | 2 | 3 | -1 | |
| 12 | Yokohama FC | 6 | 5 | 2 | 0 | 3 | 4 | 5 | -1 | |
| 13 | Zweigen Kanazawa | 5 | 5 | 1 | 2 | 2 | 9 | 6 | 3 | |
| 14 | Omiya Ardija | 5 | 5 | 1 | 2 | 2 | 5 | 6 | -1 | |
| 15 | Kagoshima United FC | 4 | 4 | 1 | 1 | 2 | 5 | 6 | -1 | |
| 16 | Tochigi SC | 4 | 4 | 1 | 1 | 2 | 3 | 6 | -3 | |
| 16 | Avispa Fukuoka | 4 | 5 | 1 | 1 | 3 | 3 | 6 | -3 | |
| 18 | Renofa Yamaguchi FC | 3 | 4 | 1 | 0 | 3 | 9 | 11 | -2 | |
| 19 | Tokushima Vortis | 3 | 4 | 1 | 0 | 3 | 5 | 7 | -2 | |
| 20 | Tokyo Verdy | 3 | 4 | 1 | 0 | 3 | 4 | 6 | -2 | |
| 21 | FC Machida Zelvia | 3 | 4 | 1 | 0 | 3 | 2 | 10 | -8 | |
| 22 | JEF United Chiba | 2 | 4 | 0 | 2 | 2 | 4 | 10 | -6 |
