| Rank | Club | Pts | Game | W | D | L | GF | GA | GD | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Mito Hollyhock | 30 | 15 | 8 | 6 | 1 | 15 | 5 | 10 | |
| 2 | Montedio Yamagata | 28 | 14 | 8 | 4 | 2 | 18 | 9 | 9 | |
| 3 | Ventforet Kofu | 26 | 15 | 7 | 5 | 3 | 22 | 12 | 10 | |
| 4 | Kyoto Sanga F.C. | 26 | 15 | 7 | 5 | 3 | 18 | 12 | 6 | |
| 5 | Omiya Ardija | 26 | 14 | 7 | 5 | 2 | 17 | 11 | 6 | |
| 6 | V･Varen Nagasaki | 24 | 15 | 7 | 3 | 5 | 17 | 14 | 3 | |
| 7 | Kashiwa Reysol | 23 | 14 | 6 | 5 | 3 | 11 | 7 | 4 | |
| 8 | Zweigen Kanazawa | 22 | 14 | 6 | 4 | 4 | 21 | 12 | 9 | |
| 9 | Tokyo Verdy | 21 | 15 | 5 | 6 | 4 | 20 | 18 | 2 | |
| 10 | FC Ryukyu | 20 | 14 | 5 | 5 | 4 | 19 | 16 | 3 | |
| 11 | Fagiano Okayama | 19 | 14 | 5 | 4 | 5 | 16 | 16 | 0 | |
| 12 | Yokohama FC | 18 | 15 | 5 | 3 | 7 | 16 | 18 | -2 | |
| 13 | JEF United Chiba | 18 | 15 | 4 | 6 | 5 | 17 | 21 | -4 | |
| 14 | Albirex Niigata | 17 | 14 | 4 | 5 | 5 | 19 | 17 | 2 | |
| 15 | Tokushima Vortis | 17 | 15 | 4 | 5 | 6 | 16 | 18 | -2 | |
| 16 | FC Machida Zelvia | 16 | 14 | 4 | 4 | 6 | 11 | 19 | -8 | |
| 17 | Ehime FC | 15 | 15 | 4 | 3 | 8 | 13 | 19 | -6 | |
| 18 | Kagoshima United FC | 14 | 14 | 4 | 2 | 8 | 12 | 17 | -5 | |
| 19 | Tochigi SC | 14 | 14 | 3 | 5 | 6 | 11 | 17 | -6 | |
| 20 | Renofa Yamaguchi FC | 12 | 15 | 3 | 3 | 9 | 20 | 29 | -9 | |
| 21 | Avispa Fukuoka | 12 | 14 | 3 | 3 | 8 | 11 | 20 | -9 | |
| 22 | FC Gifu | 12 | 14 | 3 | 3 | 8 | 11 | 24 | -13 |
