| Rank | Club | Pts | Game | W | D | L | GF | GA | GD | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Mito Hollyhock | 19 | 9 | 5 | 4 | 0 | 11 | 4 | 7 | |
| 2 | Montedio Yamagata | 18 | 9 | 5 | 3 | 1 | 12 | 6 | 6 | |
| 3 | Omiya Ardija | 17 | 9 | 5 | 2 | 2 | 12 | 8 | 4 | |
| 4 | Kashiwa Reysol | 17 | 9 | 5 | 2 | 2 | 9 | 5 | 4 | |
| 5 | Ventforet Kofu | 16 | 9 | 4 | 4 | 1 | 14 | 7 | 7 | |
| 6 | FC Ryukyu | 16 | 9 | 4 | 4 | 1 | 16 | 11 | 5 | |
| 7 | Kyoto Sanga F.C. | 15 | 9 | 4 | 3 | 2 | 9 | 7 | 2 | |
| 8 | Zweigen Kanazawa | 14 | 9 | 4 | 2 | 3 | 15 | 8 | 7 | |
| 9 | FC Machida Zelvia | 13 | 9 | 4 | 1 | 4 | 7 | 12 | -5 | |
| 10 | Albirex Niigata | 12 | 9 | 3 | 3 | 3 | 12 | 10 | 2 | |
| 11 | Fagiano Okayama | 12 | 9 | 3 | 3 | 3 | 11 | 11 | 0 | |
| 11 | Tokushima Vortis | 12 | 9 | 3 | 3 | 3 | 11 | 11 | 0 | |
| 13 | V･Varen Nagasaki | 11 | 9 | 3 | 2 | 4 | 8 | 9 | -1 | |
| 14 | Ehime FC | 11 | 9 | 3 | 2 | 4 | 7 | 8 | -1 | |
| 15 | Yokohama FC | 10 | 9 | 3 | 1 | 5 | 8 | 10 | -2 | |
| 16 | JEF United Chiba | 10 | 9 | 2 | 4 | 3 | 7 | 12 | -5 | |
| 17 | Tokyo Verdy | 9 | 9 | 2 | 3 | 4 | 9 | 10 | -1 | |
| 18 | Tochigi SC | 9 | 9 | 2 | 3 | 4 | 6 | 10 | -4 | |
| 19 | Renofa Yamaguchi FC | 8 | 9 | 2 | 2 | 5 | 15 | 18 | -3 | |
| 20 | Avispa Fukuoka | 8 | 9 | 2 | 2 | 5 | 6 | 11 | -5 | |
| 21 | FC Gifu | 8 | 9 | 2 | 2 | 5 | 5 | 13 | -8 | |
| 22 | Kagoshima United FC | 4 | 9 | 1 | 1 | 7 | 5 | 14 | -9 |
