| Rank | Club | Pts | Game | W | D | L | GF | GA | GD | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Giravanz Kitakyushu | 44 | 21 | 14 | 2 | 5 | 35 | 22 | 13 | |
| 2 | Tokushima Vortis | 43 | 21 | 13 | 4 | 4 | 35 | 17 | 18 | |
| 3 | V･Varen Nagasaki | 40 | 21 | 11 | 7 | 3 | 29 | 20 | 9 | |
| 4 | Avispa Fukuoka | 37 | 21 | 11 | 4 | 6 | 22 | 18 | 4 | |
| 5 | Kyoto Sanga F.C. | 34 | 21 | 9 | 7 | 5 | 26 | 20 | 6 | |
| 6 | Ventforet Kofu | 34 | 21 | 8 | 10 | 3 | 30 | 24 | 6 | |
| 7 | Jubilo Iwata | 30 | 21 | 7 | 9 | 5 | 32 | 24 | 8 | |
| 8 | Albirex Niigata | 30 | 21 | 7 | 9 | 5 | 29 | 26 | 3 | |
| 9 | Tochigi SC | 30 | 21 | 8 | 6 | 7 | 20 | 20 | 0 | |
| 10 | FC Machida Zelvia | 29 | 21 | 7 | 8 | 6 | 23 | 21 | 2 | |
| 11 | Tokyo Verdy | 28 | 21 | 7 | 7 | 7 | 25 | 22 | 3 | |
| 12 | Mito Hollyhock | 27 | 21 | 7 | 6 | 8 | 34 | 32 | 2 | |
| 13 | Zweigen Kanazawa | 27 | 21 | 7 | 6 | 8 | 31 | 31 | 0 | |
| 14 | JEF United Chiba | 26 | 21 | 8 | 2 | 11 | 27 | 26 | 1 | |
| 15 | Omiya Ardija | 26 | 21 | 7 | 5 | 9 | 17 | 24 | -7 | |
| 16 | Fagiano Okayama | 24 | 21 | 6 | 6 | 9 | 18 | 22 | -4 | |
| 17 | Montedio Yamagata | 23 | 21 | 5 | 8 | 8 | 20 | 22 | -2 | |
| 18 | FC Ryukyu | 23 | 21 | 6 | 5 | 10 | 32 | 37 | -5 | |
| 19 | Renofa Yamaguchi FC | 19 | 21 | 5 | 4 | 12 | 22 | 37 | -15 | |
| 20 | Matsumoto Yamaga F.C. | 19 | 21 | 4 | 7 | 10 | 20 | 35 | -15 | |
| 21 | Thespakusatsu Gunma | 19 | 21 | 6 | 1 | 14 | 17 | 36 | -19 | |
| 22 | Ehime FC | 17 | 21 | 4 | 5 | 12 | 21 | 29 | -8 |
