| Rank | Club | Pts | Game | W | D | L | GF | GA | GD | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Fagiano Okayama | 20 | 9 | 6 | 2 | 1 | 10 | 3 | 7 | |
| 2 | Oita Trinita | 18 | 9 | 5 | 3 | 1 | 17 | 8 | 9 | |
| 3 | Renofa Yamaguchi FC | 17 | 9 | 5 | 2 | 2 | 17 | 13 | 4 | |
| 4 | FC Machida Zelvia | 16 | 9 | 4 | 4 | 1 | 15 | 11 | 4 | |
| 5 | Tokyo Verdy | 15 | 9 | 3 | 6 | 0 | 9 | 3 | 6 | |
| 6 | Mito Hollyhock | 15 | 9 | 4 | 3 | 2 | 11 | 6 | 5 | |
| 7 | Avispa Fukuoka | 15 | 9 | 4 | 3 | 2 | 13 | 10 | 3 | |
| 8 | Roasso Kumamoto | 14 | 9 | 4 | 2 | 3 | 13 | 13 | 0 | |
| 9 | Yokohama FC | 13 | 9 | 3 | 4 | 2 | 10 | 12 | -2 | |
| 10 | Zweigen Kanazawa | 12 | 9 | 3 | 3 | 3 | 13 | 9 | 4 | |
| 11 | Montedio Yamagata | 12 | 9 | 3 | 3 | 3 | 11 | 12 | -1 | |
| 12 | Matsumoto Yamaga F.C. | 11 | 9 | 2 | 5 | 2 | 11 | 11 | 0 | |
| 13 | Albirex Niigata | 11 | 9 | 3 | 2 | 4 | 9 | 9 | 0 | |
| 14 | Tokushima Vortis | 11 | 9 | 3 | 2 | 4 | 8 | 10 | -2 | |
| 15 | Tochigi SC | 11 | 9 | 3 | 2 | 4 | 11 | 17 | -6 | |
| 16 | JEF United Chiba | 10 | 9 | 3 | 1 | 5 | 16 | 19 | -3 | |
| 17 | Ventforet Kofu | 9 | 9 | 2 | 3 | 4 | 8 | 9 | -1 | |
| 18 | FC Gifu | 9 | 9 | 2 | 3 | 4 | 11 | 13 | -2 | |
| 19 | Omiya Ardija | 8 | 9 | 2 | 2 | 5 | 12 | 15 | -3 | |
| 20 | Ehime FC | 7 | 9 | 2 | 1 | 6 | 6 | 14 | -8 | |
| 21 | Kyoto Sanga F.C. | 6 | 9 | 1 | 3 | 5 | 6 | 12 | -6 | |
| 22 | Kamatamare Sanuki | 6 | 9 | 1 | 3 | 5 | 7 | 15 | -8 |
